Stem-loop rno-mir-218a-2

Accession

MI0000957

Description

Rattus norvegicus rno-mir-218a-2 precursor miRNA

Literature search

14 open access papers mention rno-mir-218a-2
(43 sentences)

Sequence

319233 reads, 235 reads per million, 479 experiments

gaccaguugccgcggggcuuuccuUUGUGCUUGAUCUAACCAUGUgguggaacgauggaaacggaaCAUGGUUCUGUCAAGCACCGCGgaaagcaucgcucucuccugca
...(((..(..((((.(((((((...(((((((((..((((((((..((............))..))))))))..)))))))))...))))))).))))...)..)))..

Structure

gac   uu -cc    g       uUU         CU        gg  gaacg 
   cag  g   gcgg gcuuucc   GUGCUUGAU  AACCAUGU  ug     a
   |||  |   |||| |||||||   |||||||||  ||||||||  ||      
   guc  c   cgcu cgaaagG   CACGAACUG  UUGGUACa  gc     u
-ac   cu ucu    a       CGC         UC        ag  aaagg 

Annotation confidence High

Genome context

chr10: 20428661-20428770 [+]

Mature rno-miR-218a-2-3p

• Accession: MIMAT0004740
• Description: Rattus norvegicus rno-miR-218a-2-3p mature miRNA
• Sequence: 67 - CAUGGUUCUGUCAAGCACCGCG - 88
• Evidence: experimental ; cloned [3], SOLiD [4]

Mature rno-miR-218a-5p

• Accession: MIMAT0000888
• Description: Rattus norvegicus rno-miR-218a-5p mature miRNA
• Sequence: 25 - UUGUGCUUGAUCUAACCAUGU - 45
• Evidence: experimental ; cloned [1-3], Northern [1-2], SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


4. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249