Stem-loop dps-mir-13a

Accession

MI0001310

Description

Drosophila pseudoobscura dps-mir-13a precursor miRNA

Literature search

1 open access papers mention dps-mir-13a
(2 sentences)

Sequence

488780 reads, 3161.0 reads per million, 20 experiments

uacguaaCCCAUCAAACGGUUGUGAAAUGuugcauuuaucaaaucaUAUCACAGCCAUUUUGAUGAGUuucgug
((((.(((.(((((((.((((((((.(((...............))).))))))))..))))))).))).))))

Structure

    u   C       -C        A   uugcau 
uacg aaC CAUCAAA  GGUUGUGA AUG      u
|||| ||| |||||||  |||||||| |||      u
gugc uUG GUAGUUU  CCGACACU Uac      a
    u   A       UA        A   uaaacu 

Annotation confidence High

Genome context

ref|NC_046679.1|: 10185305-10185378 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dps-mir-13a

Mature dps-miR-13a-5p

• Accession: MIMAT0053374
• Description: Drosophila pseudoobscura dps-miR-13a-5p mature miRNA
• Sequence: 8 - CCCAUCAAACGGUUGUGAAAUG - 29
• Evidence: not_experimental

Mature dps-miR-13a-3p

• Accession: MIMAT0001217
• Description: Drosophila pseudoobscura dps-miR-13a-3p mature miRNA
• Sequence: 47 - UAUCACAGCCAUUUUGAUGAGU - 68
• Evidence: not_experimental

References