Stem-loop dps-mir-100

Accession

MI0001322

Description

Drosophila pseudoobscura dps-mir-100 precursor miRNA

Literature search

2 open access papers mention dps-mir-100
(10 sentences)

Sequence

80001 reads, 522.0 reads per million, 20 experiments

ccauuaacagaAACCCGUAAUUCCGAACUUGUGcuguuuuauaucuguuaCAAGACCGGCAUUAUGGGAGUCugucaaugcaaacaacugguuuuuggca
.((((.(((((..((((((((.(((..(((((((.(........).).))))))..))).))))))))..))))).))))....................

Structure

-------------------c    a     AA        U   AA      - u uuu 
                    cauu acaga  CCCGUAAU CCG  CUUGUG c g   u
                    |||| |||||  |||||||| |||  |||||| | |    
                    guaa uguCU  GGGUAUUA GGC  GAACau g c   a
acgguuuuuggucaacaaac    c     GA        C   CA      u u uau 

Annotation confidence High

Genome context

ref|NC_046681.1|: 21484265-21484364 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dps-mir-100

Mature dps-miR-100-5p

• Accession: MIMAT0001228
• Description: Drosophila pseudoobscura dps-miR-100-5p mature miRNA
• Sequence: 12 - AACCCGUAAUUCCGAACUUGUG - 33
• Evidence: not_experimental

Mature dps-miR-100-3p

• Accession: MIMAT0053386
• Description: Drosophila pseudoobscura dps-miR-100-3p mature miRNA
• Sequence: 51 - CAAGACCGGCAUUAUGGGAGUC - 72
• Evidence: not_experimental

References