Stem-loop dre-mir-187

Accession

MI0001370

Description

Danio rerio dre-mir-187 precursor miRNA mir-187

Gene
family

RF00674; mir-187

Literature search

8 open access papers mention dre-mir-187
(14 sentences)

Sequence

194331 reads, 319.0 reads per million, 239 experiments

ugaccuguggcugggccaggGGCUGCAACACAGGACAUGGGagcugucucucacucccgcUCGUGUCUUGUGUUGCAGCCAGUggaacg
............(..(((..(((((((((((((((((((((((.((.....)))))))....))))))))))))))))))..)))..).

Structure

ugaccuguggcu gg   gg                  ----     c  u 
            g  cca  GGCUGCAACACAGGACAU    GGGag ug c
            |  |||  ||||||||||||||||||    ||||| || u
            c  ggU  CCGACGUUGUGUUCUGUG    cccuc ac c
-----------g aa   GA                  CUcg     -  u 

Annotation confidence High

Genome context

chr19: 34135607-34135695 [+]

Mature dre-miR-187-5p

• Accession: MIMAT0052738
• Description: Danio rerio dre-miR-187-5p mature miRNA
• Sequence: 21 - GGCUGCAACACAGGACAUGGG - 41
• Evidence: experimental ; PCR [1], cloned [2]

Mature dre-miR-187-3p

• Accession: MIMAT0001274
• Description: Danio rerio dre-miR-187-3p mature miRNA
• Sequence: 61 - UCGUGUCUUGUGUUGCAGCCAGU - 83
• Evidence: experimental ; PCR [1], cloned [2]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293