miRBase entry: dre-mir-192

Stem-loop dre-mir-192

Accession

MI0001371

Description

Danio rerio dre-mir-192 precursor miRNA mir-192

Gene
family?

RF00130; mir-192

Literature search

3 open access papers mention dre-mir-192
(7 sentences)

Sequence

2273 reads, 153 reads per million, 11 experiments

cuaggacacagggugAUGACCUAUGAAUUGACAGCCaguguuugcaguccagcugccugucaguucuguaggccacugcccuguu
.......((((((((.((.(((((((((((((((.((((............)))).)))))))))).))))).)).)))))))).

Structure

cuaggac        A  A     -          C    guuug 
       acagggug UG CCUAU GAAUUGACAG Cagu     c
       |||||||| || ||||| |||||||||| ||||      
       ugucccgu ac ggaug cuugacuguc gucg     a
------u        c  c     u          c    accug

Annotation confidence High

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Genome context

chr10: 27063354-27063438 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-192

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-192

Accession	MIMAT0001275
Description	Danio rerio dre-miR-192 mature miRNA
Sequence	16 - AUGACCUAUGAAUUGACAGCC - 36
Evidence	experimental PCR [1], cloned [2]
Database links
Predicted targets

References

PubMed ID: 12624257
Vertebrate microRNA genes
"Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
"Science (2003) 299:1540

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293