Stem-loop dre-mir-192

Accession

MI0001371

Description

Danio rerio dre-mir-192 precursor miRNA mir-192

Gene
family

RF00130; mir-192

Literature search

30 open access papers mention dre-mir-192
(47 sentences)

Sequence

16947540 reads, 17170.0 reads per million, 278 experiments

cuaggacacagggugAUGACCUAUGAAUUGACAGCCAguguuugcaguccagcugCCUGUCAGUUCUGUAGGCCACUgcccuguu
.......((((((((.((.(((((((((((((((.((((............)))).)))))))))).))))).)).)))))))).

Structure

cuaggac        A  A     -          C    guuug 
       acagggug UG CCUAU GAAUUGACAG CAgu     c
       |||||||| || ||||| |||||||||| ||||      
       ugucccgU AC GGAUG CUUGACUGUC gucg     a
------u        C  C     U          C    accug 

Annotation confidence High

Genome context

chr10: 27063354-27063438 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-192

Mature dre-miR-192-5p

• Accession: MIMAT0001275
• Description: Danio rerio dre-miR-192-5p mature miRNA
• Sequence: 16 - AUGACCUAUGAAUUGACAGCCA - 37
• Evidence: experimental ; PCR [1], cloned [2]

Mature dre-miR-192-3p

• Accession: MIMAT0060857
• Description: Danio rerio dre-miR-192-3p mature miRNA
• Sequence: 56 - CCUGUCAGUUCUGUAGGCCACU - 77
• Evidence: experimental ; PCR [1], cloned [2]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293