Stem-loop dre-mir-216a

Accession

MI0001382

Description

Danio rerio dre-mir-216a precursor miRNA mir-216

Gene
family

RF00654; mir-216

Literature search

10 open access papers mention dre-mir-216a
(122 sentences)

Sequence

168120 reads, 150.0 reads per million, 233 experiments

gcugauuuuuggcaUAAUCUCAGCUGGCAACUGUGaguaguguuuucaucccucuCACAGGCGCUGCUGGGGUUCUGUcacacacagca
((((.....(((((.(((((((((.(((..(((((((..(((....)))....)))))))..)))))))))))).)))))....)))).

Structure

-    auuuu     U         U   AA       --ua   u 
 gcug     uggca AAUCUCAGC GGC  CUGUGag    gug u
 ||||     ||||| ||||||||| |||  |||||||    |||  
 cgac     acUGU UUGGGGUCG UCG  GACACuc    uac u
a    -acac     C         -   CG       uccc   u 

Annotation confidence High

Genome context

chr22: 28779949-28780037 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-216a

Mature dre-miR-216a-5p

• Accession: MIMAT0001284
• Description: Danio rerio dre-miR-216a-5p mature miRNA
• Sequence: 15 - UAAUCUCAGCUGGCAACUGUG - 35
• Evidence: experimental ; PCR [1], cloned [2]

Mature dre-miR-216a-3p

• Accession: MIMAT0052739
• Description: Danio rerio dre-miR-216a-3p mature miRNA
• Sequence: 56 - CACAGGCGCUGCUGGGGUUCUGU - 78
• Evidence: experimental ; PCR [1], cloned [2]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293