Stem-loop aga-mir-275

Accession

MI0001613

Description

Anopheles gambiae aga-mir-275 precursor miRNA

Literature search

7 open access papers mention aga-mir-275
(9 sentences)

Sequence

117062 reads, 6172.0 reads per million, 24 experiments

ugagccgucuaaugacaCGCGCUAAGCAGGAACCGGGACUugguacacauucgcuagcagUCAGGUACCUGAAGUAGCGCGCGuuauucggcuca
(((((((...((((((.(((((((..((((.(((..((((((((........))))..)))).))).))))...))))))).)))))))))))))

Structure

       ucu      a       -AG    A   GG    --    aca 
ugagccg   aaugac CGCGCUA   CAGG ACC  GACU  uggu   c
|||||||   |||||| |||||||   |||| |||  ||||  ||||    
acucggc   uuauuG GCGCGAU   GUCC UGG  CUga  aucg   a
       ---      C       GAA    A   -A    cg    cuu 

Annotation confidence High

Genome context

ref|NC_064602.1|: 38099925-38100019 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aga-mir-275

Mature aga-miR-275-5p

• Accession: MIMAT0053003
• Description: Anopheles gambiae aga-miR-275-5p mature miRNA
• Sequence: 18 - CGCGCUAAGCAGGAACCGGGACU - 40
• Evidence: experimental ; cloned [1]

Mature aga-miR-275-3p

• Accession: MIMAT0001508
• Description: Anopheles gambiae aga-miR-275-3p mature miRNA
• Sequence: 61 - UCAGGUACCUGAAGUAGCGCGCG - 83
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17933784
   Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion
   "Winter F, Edaye S, Huttenhofer A, Brunel C"
   "Nucleic Acids Res (2007) 35:6953-6962