Stem-loop dre-mir-24a-1

Accession

MI0001921

Description

Danio rerio dre-mir-24a-1 precursor miRNA mir-24

Gene
family

RF00178; mir-24

Literature search

8 open access papers mention dre-mir-24a-1
(90 sentences)

Sequence

436754 reads, 529.0 reads per million, 278 experiments

accugagcuccggUGCCUUCUGAGCUGAUAUCAGUUGuaguaaaucacUGGCUCAGUUCAGCAGGAACAGgaguguggcc
.((...(((((.((.(((.(((((((((..(((((.(........)))))).))))))))).))).)).)))))..))..

Structure

-a  uga     g  G   U         UA     U uag 
  cc   gcucc gU CCU CUGAGCUGA  UCAGU G   u
  ||   ||||| || ||| |||||||||  ||||| |    
  gg   ugagG CA GGA GACUUGACU  GGUca c   a
cc  -ug     A  A   C         -C     - uaa 

Annotation confidence High

Genome context

chr10: 15960835-15960914 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-24a-1

Mature dre-miR-24a-1-5p

• Accession: MIMAT0060870
• Description: Danio rerio dre-miR-24a-1-5p mature miRNA
• Sequence: 14 - UGCCUUCUGAGCUGAUAUCAGUUG - 37
• Evidence: experimental ; unknown

Mature dre-miR-24a-3p

• Accession: MIMAT0001792
• Description: Danio rerio dre-miR-24a-3p mature miRNA
• Sequence: 49 - UGGCUCAGUUCAGCAGGAACAG - 70
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293