miRBase entry: dre-mir-24-1

Stem-loop dre-mir-24-1

Accession

MI0001921

Description

Danio rerio dre-mir-24-1 precursor miRNA mir-24

Gene
family?

RF00178; mir-24

Literature search

5 open access papers mention dre-mir-24-1
(81 sentences)

Sequence

12417 reads, 630 reads per million, 11 experiments

accugagcuccggugccuucugagcugauaucaguuguaguaaaucacUGGCUCAGUUCAGCAGGAACAGgaguguggcc
.((...(((((.((.(((.(((((((((..(((((.(........)))))).))))))))).))).)).)))))..))..

Structure

-a  uga     g  g   u         ua     u uag 
  cc   gcucc gu ccu cugagcuga  ucagu g   u
  ||   ||||| || ||| |||||||||  ||||| |    
  gg   ugagG CA GGA GACUUGACU  GGUca c   a
cc  -ug     A  A   C         -C     - uaa

Annotation confidence High

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Genome context

chr10: 15960835-15960914 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-24-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-24

Accession	MIMAT0001792
Description	Danio rerio dre-miR-24 mature miRNA
Sequence	49 - UGGCUCAGUUCAGCAGGAACAG - 70
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293