Stem-loop dre-mir-153a

Accession

MI0002021

Description

Danio rerio dre-mir-153a precursor miRNA mir-153

Gene
family

RF00650; mir-153

Literature search

5 open access papers mention dre-mir-153a
(146 sentences)

Sequence

1782 reads, 211 reads per million, 11 experiments

gguugccaguGUCAUUUUUGUGAUGUUGCAGCUaguuauaugagcccagUUGCAUAGUCACAAAAGUGAUCauuggaaacu
((((.(((((((((((((((((((..(((((((.(((.....)))..)))))))..))))))))))))).)))))).))))

Structure

    g      -             GU       -a   a 
gguu ccaguG UCAUUUUUGUGAU  UGCAGCU  guu u
|||| |||||| |||||||||||||  |||||||  ||| a
ucaa gguuaC AGUGAAAACACUG  ACGUUga  cga u
    a      U             AU       cc   g 

Annotation confidence High

Genome context

chr7: 40485510-40485590 [+]

Mature dre-miR-153a-3p

• Accession: MIMAT0001849
• Description: Danio rerio dre-miR-153a-3p mature miRNA
• Sequence: 50 - UUGCAUAGUCACAAAAGUGAUC - 71
• Evidence: experimental ; cloned [1]

Mature dre-miR-153a-5p

• Accession: MIMAT0031978
• Description: Danio rerio dre-miR-153a-5p mature miRNA
• Sequence: 11 - GUCAUUUUUGUGAUGUUGCAGCU - 33
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293