Stem-loop dre-mir-194a

Accession

MI0002033

Description

Danio rerio dre-mir-194a precursor miRNA mir-194

Gene
family

RF00257; mir-194

Literature search

7 open access papers mention dre-mir-194a
(24 sentences)

Sequence

3700026 reads, 5585.0 reads per million, 262 experiments

uggugcugacugcuUGUAACAGCAACUCCAUGUGGaagguuugugucuuCCAGUGGAGCUGCUGUUGCGUGcagauagucacca
((((((((.((((.((((((((((.((((((.(((((((......))))))))))))).)))))))))).)))).))).)))))

Structure

     -   a    u          A      G       uu 
uggug cug cugc UGUAACAGCA CUCCAU UGGaagg  u
||||| ||| |||| |||||||||| |||||| |||||||   
accac gau gacG GCGUUGUCGU GAGGUG ACCuucu  g
     u   a    U          C      -       gu 

Annotation confidence High

Genome context

chr10: 27063174-27063257 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-194a

Mature dre-miR-194a-5p

• Accession: MIMAT0001858
• Description: Danio rerio dre-miR-194a-5p mature miRNA
• Sequence: 15 - UGUAACAGCAACUCCAUGUGG - 35
• Evidence: experimental ; cloned [1]

Mature dre-miR-194a-3p

• Accession: MIMAT0052771
• Description: Danio rerio dre-miR-194a-3p mature miRNA
• Sequence: 50 - CCAGUGGAGCUGCUGUUGCGUG - 71
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293