miRBase entry: dre-mir-194a

Stem-loop dre-mir-194a

Accession

MI0002033

Description

Danio rerio dre-mir-194a precursor miRNA mir-194

Gene
family?

RF00257; mir-194

Literature search

7 open access papers mention dre-mir-194a
(24 sentences)

Sequence

2744 reads, 198 reads per million, 10 experiments

uggugcugacugcuUGUAACAGCAACUCCAUGUGGaagguuugugucuuccaguggagcugcuguugcgugcagauagucacca
((((((((.((((.((((((((((.((((((.(((((((......))))))))))))).)))))))))).)))).))).)))))

Structure

     -   a    u          A      G       uu 
uggug cug cugc UGUAACAGCA CUCCAU UGGaagg  u
||||| ||| |||| |||||||||| |||||| |||||||   
accac gau gacg gcguugucgu gaggug accuucu  g
     u   a    u          c      -       gu

Annotation confidence Not enough data

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Genome context

chr10: 27063174-27063257 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-194a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-194a

Accession	MIMAT0001858
Description	Danio rerio dre-miR-194a mature miRNA
Sequence	15 - UGUAACAGCAACUCCAUGUGG - 35
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293