Search results

mir-194 family in Rfam (RF00257)

Summary
Expression of miR-194 has been verified in mouse (MIR:MI0000236, MIR:MI0000733) [1] and human (MIR:MI0000488, MIR:MI0000732) [2]. miR-194 appears to be a vertebrate specific miRNA and has now been predicted or experimentally confirmed in a range of vertebrate species (MIPF:MIPF0000055). The hairpin precursors (represented here) are predicted based on base pairing and cross-species conservation -- their extents are not known. In this case the mature sequence is excised from the 5' arm of the hairpin. Family represents the microRNA (miRNA) precursor mir-412 imported from miRBase [3].
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5'

There are 47 hairpins in the mir-194 family

Name Accession RPM Chromosome Start End Strand Confidence
mmu-mir-194-1 MI0000236 1251 chr1 185313319 185313385 + High
hsa-mir-194-1 MI0000488 266 chr1 220118157 220118241 - -
hsa-mir-194-2 MI0000732 297 chr11 64891355 64891439 - High
mmu-mir-194-2 MI0000733 1292 chr19 6264643 6264728 + High
rno-mir-194-1 MI0000937 2147 chr13 103250576 103250658 + High
rno-mir-194-2 MI0000938 1967 chr1 221634786 221634870 + High
gga-mir-194 MI0001202 4 chr3 18822853 18822927 + -
dre-mir-194a MI0002033 198 chr10 27063174 27063257 + -
dre-mir-194b MI0002034 40 chr14 45468955 45469031 - -
mml-mir-194-1 MI0003024 647 chr1 146240974 146241058 + -
ptr-mir-194 MI0003026 - chr1 199161665 199161749 - -
ppy-mir-194 MI0003028 - chr1 29611601 29611685 + -
ggo-mir-194 MI0003030 - chr1 200132006 200132090 - -
mne-mir-194 MI0003032 - None None -
age-mir-194 MI0003034 - None None -
fru-mir-194 MI0003259 - HE602549.1 7517908 7517979 - -
tni-mir-194 MI0003260 - 7 7655321 7655401 + -
xtr-mir-194-1 MI0004857 - chr5 6915454 6915533 + -
xtr-mir-194-2 MI0004858 - chr4 38492064 38492149 + -
oan-mir-194-1 MI0006782 507 Contig27098 3308 3405 + -
oan-mir-194-2 MI0006795 529 Contig35411 246 337 - High
mml-mir-194-2 MI0007657 666 chr14 9567012 9567096 + High
cfa-mir-194 MI0008091 - chr38 14895401 14895458 - -
bta-mir-194-2 MI0009765 4433 chr29 44018295 44018377 + High
bta-mir-194-1 MI0012208 5679 chr16 24405220 24405316 - High
eca-mir-194-1 MI0012793 3 chr12 25044429 25044513 - -
eca-mir-194-2 MI0012937 3 chr30 10337925 10338009 - -
tgu-mir-194-1 MI0013775 - chr3 9653586 9653657 + -
tgu-mir-194-2 MI0013776 - chrUn 94526975 94527046 + -
ssc-mir-194b MI0015905 0 chr10 11786871 11786948 - -
pma-mir-194 MI0017098 - None None -
aca-mir-194-1 MI0018789 - chr1 243290929 243291013 - -
aca-mir-194-2 MI0018790 - GL343545.1 154408 154494 - -
ola-mir-194 MI0019499 - 14 20215672 20215781 + -
ssc-mir-194a MI0022137 11 chr2 6416779 6416854 + -
ccr-mir-194 MI0023356 - None None -
ipu-mir-194a MI0024542 - None None -
oar-mir-194 MI0025261 1521 chr21 42321057 42321139 - -
ssa-mir-194a-1 MI0026555 - None None -
ssa-mir-194a-2 MI0026556 - None None -
ssa-mir-194b MI0026557 - None None -
ssa-mir-194c MI0026558 - None None -
efu-mir-194-1 MI0028609 - JH977666.1 4370823 4370900 + -
efu-mir-194-2 MI0028864 - JH977826.1 1052832 1052909 - -
chi-mir-194 MI0030668 - chr16 23074153 23074249 - -
tch-mir-194 MI0031298 - KB320702.1 1746894 1746951 - -
oha-mir-194-1 MI0031388 - AZIM01001511.1 634495 634574 + -



Comments or questions? Email mirbase@manchester.ac.uk