Stem-loop xtr-mir-194-1

Accession

MI0004857

Description

Xenopus tropicalis xtr-mir-194-1 precursor miRNA

Sequence

12388 reads, 963.0 reads per million, 4 experiments

uaguguguaucaggUGUAACAGCAACUCCAUGUGGAcuuguccguauucCAGUGGAGAUGCUGUUACUUUUgaugggcac
..((((.(((((((.(((((((((.((((((.((((...........)))))))))).))))))))).))))))).))))

Structure

ua    g       U         A      G    cuug 
  gugu uaucagg GUAACAGCA CUCCAU UGGA    u
  |||| ||||||| ||||||||| |||||| ||||    c
  cacg guagUUU CAUUGUCGU GAGGUG ACcu    c
--    g       U         A      -    uaug 

Annotation confidence Not enough data

Genome context

5: 10620810-10620889 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-194-1

Mature xtr-miR-194-5p

• Accession: MIMAT0003617
• Description: Xenopus tropicalis xtr-miR-194-5p mature miRNA
• Sequence: 15 - UGUAACAGCAACUCCAUGUGGA - 36
• Evidence: experimental ; Northern [1]

Mature xtr-miR-194-1-3p

• Accession: MIMAT0052123
• Description: Xenopus tropicalis xtr-miR-194-1-3p mature miRNA
• Sequence: 50 - CAGUGGAGAUGCUGUUACUUUU - 71
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112