Stem-loop cfa-mir-194

Accession

MI0008091

Description

Canis lupus familiaris cfa-mir-194 precursor miRNA

Literature search

3 open access papers mention cfa-mir-194
(4 sentences)

Sequence

266880 reads, 660.0 reads per million, 80 experiments

UGUAACAGCAACUCCAUGUGGAuugugugccaauuuccaguggagaugcuguuacuuu
.(((((((((.((((((.((((...((...))...)))))))))).)))))))))...

Structure

--U         A      G    uug  u 
   GUAACAGCA CUCCAU UGGA   ug  
   ||||||||| |||||| ||||   || g
   cauugucgu gaggug accu   ac  
uuu         a      -    uua  c 

Annotation confidence Not enough data

Genome context

38: 14930881-14930938 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-194

Mature cfa-miR-194-5p

• Accession: MIMAT0006681
• Description: Canis lupus familiaris cfa-miR-194-5p mature miRNA
• Sequence: 1 - UGUAACAGCAACUCCAUGUGGA - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415