Stem-loop fru-mir-194

Accession

MI0003259

Description

Fugu rubripes fru-mir-194 precursor miRNA

Literature search

1 open access papers mention fru-mir-194
(6 sentences)

Sequence

380559 reads, 5225.0 reads per million, 12 experiments

cgcuggaUGUAACAGCAACUCCAUGUGGaagcuguaugugaguuCCAGUGGAAGUGCUGUUACCUgcagaga
..(((.(.(((((((((..(((((.(((((.((.......))))))))))))..))))))))).).)))...

Structure

-cg   g U         AC     G     g  gu 
   cug a GUAACAGCA  UCCAU UGGaa cu  a
   ||| | |||||||||  ||||| ||||| ||  u
   gac U CAUUGUCGU  AGGUG ACCuu ga  g
aga   g C         GA     -     -  gu 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042299.1|: 11337995-11338066 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-194

Mature fru-miR-194-5p

• Accession: MIMAT0002943
• Description: Fugu rubripes fru-miR-194-5p mature miRNA
• Sequence: 8 - UGUAACAGCAACUCCAUGUGG - 28
• Evidence: not_experimental

Mature fru-miR-194-3p

• Accession: MIMAT0052840
• Description: Fugu rubripes fru-miR-194-3p mature miRNA
• Sequence: 45 - CCAGUGGAAGUGCUGUUACCU - 65
• Evidence: not_experimental

References