miRBase entry: mml-mir-194-1

Stem-loop mml-mir-194-1


Accession
MI0003024
Description
Macaca mulatta mml-mir-194-1 precursor miRNA mir-194
Gene
family?
RF00257; mir-194

Literature search
1 open access papers mention mml-mir-194-1
(1 sentences)

Sequence

93010 reads, 716 reads per million, 8 experiments
augguguuaucaagUGUAACAGCAACUCCAUGUGGAcuguguaccaauuuccaguggagaugcuguuacuuuugaugguuaccaa
.(((((.(((((((.(((((((((.((((((.((((..((......)).)))))))))).))))))))).)))))))..))))).

Structure
a     -u       U         A      G    cu  gu 
 uggug  uaucaag GUAACAGCA CUCCAU UGGA  gu  a
 |||||  ||||||| ||||||||| |||||| ||||  ||   
 accau  guaguuu cauugucgu gaggug accu  ua  c
a     ug       u         a      -    -u  ac 


Annotation confidence Low
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr1: 146240974-146241058 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mml-mir-194-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-194-5p

Accession MIMAT0002727
Description Macaca mulatta mml-miR-194-5p mature miRNA
Sequence 15 - UGUAACAGCAACUCCAUGUGGA - 36
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24