miRBase entry: mml-mir-194-1

Stem-loop mml-mir-194-1

Accession

MI0003024

Description

Macaca mulatta mml-mir-194-1 precursor miRNA mir-194

Gene
family?

RF00257; mir-194

Literature search

1 open access papers mention mml-mir-194-1
(1 sentences)

Sequence

528553 reads, 918.0 reads per million, 149 experiments

augguguuaucaagUGUAACAGCAACUCCAUGUGGAcuguguaccaauuuCCAGUGGAGAUGCUGUUACUUUugaugguuaccaa
.(((((.(((((((.(((((((((.((((((.((((..((......)).)))))))))).))))))))).)))))))..))))).

Structure

a     -u       U         A      G    cu  gu 
 uggug  uaucaag GUAACAGCA CUCCAU UGGA  gu  a
 |||||  ||||||| ||||||||| |||||| ||||  ||   
 accau  guaguUU CAUUGUCGU GAGGUG ACCu  ua  c
a     ug       U         A      -    -u  ac

Annotation confidence High

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

1: 77683091-77683175 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mml-mir-194-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mml-miR-194-1-5p

Accession	MIMAT0002727
Description	Macaca mulatta mml-miR-194-1-5p mature miRNA
Sequence	15 - UGUAACAGCAACUCCAUGUGGA - 36
Evidence	experimental Illumina [2]
Database links
Predicted targets

Mature mml-miR-194-1-3p

Accession	MIMAT0051609
Description	Macaca mulatta mml-miR-194-1-3p mature miRNA
Sequence	51 - CCAGUGGAGAUGCUGUUACUUU - 72
Evidence	experimental Illumina [2]

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24