Stem-loop ptc-MIR156e

Accession

MI0002188

Description

Populus trichocarpa ptc-MIR156e precursor miRNA

Literature search

8 open access papers mention ptc-MIR156e
(76 sentences)

Sequence

29532 reads, 480.0 reads per million, 9 experiments

cauuagaaacUGACAGAAGAGAGUGAGCACAcagaggcauauuuguauaaaucuauaccauugcuuuugcguGCUCACUUCUCAUUCUGUCAGCUUccaga
.....(((.(((((((((((((((((((((.((((((((.....(((((....)))))...)))))))).)))))))).)))).))))))))).)))....

Structure

cauua   a         -    -        A        uauuu     a 
     gaa cUGACAGAA GAGA GUGAGCAC cagaggca     guaua a
     ||| ||||||||| |||| |||||||| ||||||||     |||||  
     cUU GACUGUCUU CUCU CACUCGug guuuucgu     cauau u
-agac   C         A    U        c        --uac     c 

Annotation confidence High

Genome context

Unknown

Mature ptc-miR156e-5p

• Accession: MIMAT0001894
• Description: Populus trichocarpa ptc-miR156e-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCACA - 31
• Evidence: not_experimental

Mature ptc-miR156e-3p

• Accession: MIMAT0055562
• Description: Populus trichocarpa ptc-miR156e-3p mature miRNA
• Sequence: 73 - GCUCACUUCUCAUUCUGUCAGCUU - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203