Stem-loop ptc-MIR319e

Accession

MI0002300

Description

Populus trichocarpa ptc-MIR319e precursor miRNA

Literature search

8 open access papers mention ptc-MIR319e
(30 sentences)

Sequence

ggaggggcugaggugcuccuuuuaguccaauacggagggcugagaagcggcuagagcugccaucucaugcauuuaggcaaugcuuaacauuugacgaagagagguuaagcuuggccacuugcauggugugggagcaacuccuuccgcaugcuuugcucgcccaUUGGACUGAAGGGAGCUCCUgguuuuacc
((.((((((.(((.(((((((((((((((((..((.((((.((((.((((...(((((.((((.(((((((....(((...(((((((.(((.......))).)))))))...)))...))))))).)))).)))...))...)))).).))).)))).)).))))))))))))))))).))))))))).))

Structure

  a      g   u                 ac  a    u   - a    cua  ---   g    c       uuua   aau       a   ga 
gg ggggcu agg gcuccuuuuaguccaau  gg gggc gag a gcgg   ga   gcu ccau ucaugca    ggc   gcuuaac uuu  c
|| |||||| ||| |||||||||||||||||  || |||| ||| | ||||   ||   ||| |||| |||||||    |||   ||||||| |||  g
cc uuuugg UCC CGAGGGAAGUCAGGUUa  cc cucg uuc u cgcc   cu   cga ggug gguacgu    ccg   cgaauug aga  a
  a      -   U                 -c  g    u   g a    uuc  caa   g    u       -uca   guu       g   ga 

Annotation confidence Not enough data

Genome context

CM000348.2: 4980083-4980274 [-]

Mature ptc-miR319e

• Accession: MIMAT0002006
• Description: Populus trichocarpa ptc-miR319e mature miRNA
• Sequence: 164 - UUGGACUGAAGGGAGCUCCU - 183
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203