Stem-loop ptc-MIR319i

Accession

MI0002304

Description

Populus trichocarpa ptc-MIR319i precursor miRNA

Literature search

8 open access papers mention ptc-MIR319i
(30 sentences)

Sequence

gugcagaaauggagguuccuuccagccucaagcaucuuuaagaugguggcgaugucuauuUUGGGCUGAAGGGAGCUCCCaauucuucu
....((((.(((.((((((((.(((((.((((((((.(((......))).))))).....)))))))).)))))))).))).))))...

Structure

gugc    a   a        c     u   -----     u   ag 
    agaa ugg gguuccuu cagcc caa     gcauc uua  a
    |||| ||| |||||||| ||||| |||     ||||| |||   
    ucuu aCC UCGAGGGA GUCGG GUU     uguag ggu  u
-ucu    a   C        A     -   uuauc     c   gg 

Annotation confidence Not enough data

Genome context

CM000342.2: 24889057-24889145 [+]

Mature ptc-miR319i

• Accession: MIMAT0002010
• Description: Populus trichocarpa ptc-miR319i mature miRNA
• Sequence: 61 - UUGGGCUGAAGGGAGCUCCC - 80
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203