Stem-loop ptc-MIR476a

Accession

MI0002365

Description

Populus trichocarpa ptc-MIR476a precursor miRNA MIR476

Gene
family

RF00739; MIR476

Literature search

3 open access papers mention ptc-MIR476a
(11 sentences)

Sequence

6418 reads, 110.0 reads per million, 9 experiments

uuaagcUAGUAAUCCUUCUUUGCAAAGucauuuauuauuuuuccuucaauuacuauaaucaaugacuUUGCAAAGAUAGAUUUACUAGCUaaaucu
...(((((((((((..((((((((((((((((.(((((................))))).))))))))))))))))..)).)))))))))......

Structure

---uua         -  CU                u     uuuuccu 
      agcUAGUAA UC  UCUUUGCAAAGucauu auuau       u
      ||||||||| ||  |||||||||||||||| |||||        
      UCGAUCAUU AG  AGAAACGUUucaguaa uaaua       c
ucuaaa         U  AU                c     ucauuaa 

Annotation confidence High

Genome context

CM000355.2: 15352174-15352269 [-]

Mature ptc-miR476a-5p

• Accession: MIMAT0002071
• Description: Populus trichocarpa ptc-miR476a-5p mature miRNA
• Sequence: 7 - UAGUAAUCCUUCUUUGCAAAG - 27
• Evidence: experimental ; cloned [1], Northern [1]

Mature ptc-miR476a-3p

• Accession: MIMAT0055648
• Description: Populus trichocarpa ptc-miR476a-3p mature miRNA
• Sequence: 68 - UUGCAAAGAUAGAUUUACUAGCU - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203