Stem-loop ptc-MIR478a

Accession

MI0002370

Description

Populus trichocarpa ptc-MIR478a precursor miRNA

Literature search

1 open access papers mention ptc-MIR478a
(2 sentences)

Sequence

cucccuuuuaggguuaaaacgucaacauuuuagacgagucucuuauuuuuagggacugguguuauuuuuUGACGUGUCUUCUAUUUUUAGGGAcug
.(((((..(((((.....(((((((......(.((.(((((((.......))))))).)).)......)))))))...))))).....)))))...

Structure

--c     ---uu     uuaaa       cauuuu g  g       ua 
   ucccu     uaggg     acgucaa      a ac agucucu  u
   |||||     |||||     |||||||      | || |||||||  u
   AGGGA     AUCUU     UGCAGUu      u ug ucaggga  u
guc     UUUUU     --CUG       uuuuau g  g       uu 

Annotation confidence Not enough data

Genome context

CM000348.2: 7133508-7133603 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR478a

Mature ptc-miR478a

• Accession: MIMAT0002076
• Description: Populus trichocarpa ptc-miR478a mature miRNA
• Sequence: 70 - UGACGUGUCUUCUAUUUUUAGGGA - 93
• Evidence: experimental ; cloned [1], PCR [1]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203