miRBase entry: ptc-MIR478j

Stem-loop ptc-MIR478j


Accession
MI0002378
Description
Populus trichocarpa ptc-MIR478j precursor miRNA

Literature search
1 open access papers mention ptc-MIR478j
(2 sentences)

Sequence

agucuccuaauuuuuagggacugauguuauuuuUAACGUGUCUCCUAUUUUUAGGGAcc
.(((.(((((....(((((((..((((((....))))))))).))))...)))))))).

Structure
a   u     uuuu    -   ug      u 
 guc ccuaa    uagg gac  auguua u
 ||| |||||    |||| |||  ||||||  
 cAG GGAUU    AUCC CUG  UGCAAU u
c   -     -UUU    U   --      u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000344.2: 16456537-16456595 [+]

Database links

Mature ptc-miR478j

Accession MIMAT0002084
Description Populus trichocarpa ptc-miR478j mature miRNA
Sequence 34 - UAACGUGUCUCCUAUUUUUAGGGA - 57
Evidence not_experimental

References

  1. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203