Stem-loop ptc-MIR481a

Accession

MI0002392

Description

Populus trichocarpa ptc-MIR481a precursor miRNA

Literature search

2 open access papers mention ptc-MIR481a
(2 sentences)

Sequence

2094 reads, 35.0 reads per million, 9 experiments

gaagguuaaguguguugggguaguggagauggucaaagaugUUAGAGAAUAAUAUAAAUCAUAUccuAGGACCUCACUUAACAGCUUAAGCua
..((.((((((((..((((((...(((.(((((.....((((((.....))))))..))))).)))....))))))....))).))))).)).

Structure

ga  g     -   --gu      -agu   g     caaag      G 
  ag uuaag ugu    uggggu    gga auggu     augUUA A
  || ||||| |||    ||||||    ||| |||||     |||||| G
  uC AAUUC ACA    ACUCCA    ccU UACUA     UAUAAU A
-a  G     G   AUUC      GGAu   A     ---AA      A 

Annotation confidence Low

Genome context

CM000349.2: 3424019-3424111 [-]

Mature ptc-miR481a-5p

• Accession: MIMAT0055652
• Description: Populus trichocarpa ptc-miR481a-5p mature miRNA
• Sequence: 42 - UUAGAGAAUAAUAUAAAUCAUAU - 64
• Evidence: experimental ; unknown

Mature ptc-miR481a-3p

• Accession: MIMAT0002098
• Description: Populus trichocarpa ptc-miR481a-3p mature miRNA
• Sequence: 68 - AGGACCUCACUUAACAGCUUAAGC - 91
• Evidence: experimental ; PCR [1]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203