Accession
MI0002394
Description
Populus trichocarpa
ptc-MIR481c precursor miRNA
Literature search
1 open access papers mention ptc-MIR481c
(1 sentences)
(1 sentences)
Sequence
7375
reads,
122.0
reads per million, 9 experiments
auccuAGGACCUCACUUAACAGCUUAAGCuuuuggguugagaugauucuuugacaugauaucagagcuuugaugaccaagcggucacgaguucgaaucucaccaucccuauuuauuugauaaaaUUAAGCACAAGGUAAUGUGagccugugcaaguuucaagcccaaagagcuuucacuugaggggguguguuag
...((((.(((((.(((((......(((((((((((((((((((((((........)).))).((((((...(((((....))))).))))))...............((((.....)))).......(((((.(((.......))))))))..))))).))))).))))))))....))))).))).)).))))
...((((.(((((.(((((......(((((((((((((((((((((((........)).))).((((((...(((((....))))).))))))...............((((.....)))).......(((((.(((.......))))))))..))))).))))).))))))))....))))).))).)).))))
Structure
auc G - A CAGCUU - - gauucuuugacaugauaucagagcuuugaugaccaagcggucacgaguucgaaucucaccaucccuauuuauuugauaaaaUUAA A AA cuAG AC CUC CUUAA AAGCuuuu ggguu gagau GCACA GGU U |||| || ||| ||||| |||||||| ||||| ||||| ||||| ||| G gauu ug ggg gaguu uucgagaa cccga cuuug cgugu ccg U --- g u g --cacu a a -----------------------------------------------------------------------------------aa - aG
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
CM000349.2: 7623433-7623627 [-]
Database links
Mature ptc-miR481c-5p
| Accession | MIMAT0002100 |
| Description | Populus trichocarpa ptc-miR481c-5p mature miRNA |
| Sequence | 6 - AGGACCUCACUUAACAGCUUAAGC - 29 |
| Evidence |
experimental
PCR [1] |
Mature ptc-miR481c-3p
| Accession | MIMAT0055654 |
| Description | Populus trichocarpa ptc-miR481c-3p mature miRNA |
| Sequence | 125 - UUAAGCACAAGGUAAUGUG - 143 |
| Evidence |
experimental
unknown |
References
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