Stem-loop ptc-MIR481d

Accession

MI0002396

Description

Populus trichocarpa ptc-MIR481d precursor miRNA

Literature search

1 open access papers mention ptc-MIR481d
(1 sentences)

Sequence

4160 reads, 70.0 reads per million, 9 experiments

auccuAGGACCUCACCUAACAGCUUAAGCuauuggguugagaugauucuuugacaugguaucagagccuugaugaccaaguggucacgaguucgaaucucaccacuccuauuuauuugauaaaaaucaAGCACAAGGUAAUGUGGGccuaugcaaguuucaagcccaaagagcuuucacuugaggggguguauuag
...((((.(((((.(((...((...(((((.((((((((((((......(((.(((((.....((((.(((.(((((....))))))))))))....(((((....(((.....((((((....))))))....)))....))))).))))))))))))).)))))))..)))))...))..)))))).)).))))

Structure

auc    G  -   A   AAC  CUU     -a       -     gauucu   a     uaucagagccuugaugaccaaguggucacgaguucgaau     cacu   auuua      a 
   cuAG AC CUC CCU   AG   AAGCu  uuggguu gagau      uug caugg                                       cucac    ccu     uuugau a
   |||| || ||| |||   ||   |||||  ||||||| |||||      ||| |||||                                       |||||    |||     ||||||  
   gauu ug ggg gga   uc   uucga  aacccga cuuug      aac guauc                                       GGGUG    GGA     GAacua a
---    a  u   -   -gu  acu     ga       a     ------   -     --------------------------------------c     UAAU   -ACAC      a 

Annotation confidence Low

Genome context

Unknown

Mature ptc-miR481d-5p

• Accession: MIMAT0002102
• Description: Populus trichocarpa ptc-miR481d-5p mature miRNA
• Sequence: 6 - AGGACCUCACCUAACAGCUUAAGC - 29
• Evidence: experimental ; PCR [1]

Mature ptc-miR481d-3p

• Accession: MIMAT0055655
• Description: Populus trichocarpa ptc-miR481d-3p mature miRNA
• Sequence: 129 - AGCACAAGGUAAUGUGGG - 146
• Evidence: experimental ; unknown

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203