Stem-loop ssc-mir-7-2

Accession

MI0002435

Description

Sus scrofa ssc-mir-7-2 precursor miRNA

Literature search

12 open access papers mention ssc-mir-7-2
(22 sentences)

Sequence

351 reads, 168 reads per million, 14 experiments

uggauguuggucuaguucugugUGGAAGACUAGUGAUUUUGUUGUUuuuagauaacuaaaucgaCAACAAAUCACAGUCUGCCAUAuggcacaggccaugccucuacag
((((.((((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).)))))))).)).))))...

Structure

---    u  -      a  u        A     A       U      --     a 
   ugga gu uggucu gu cugugUGG AGACU GUGAUUU GUUGUU  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg accgga ca gguAUACC UCUGA CACUAAA CAACag  aaauc a
gac    c  u      -  c        G     -       -      cu     a 

Annotation confidence Not enough data

Genome context

chr10: 35113341-35113449 [+]

Mature ssc-miR-7-5p

• Accession: MIMAT0002141
• Description: Sus scrofa ssc-miR-7-5p mature miRNA
• Sequence: 23 - UGGAAGACUAGUGAUUUUGUUGUU - 46
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-7-3p

• Accession: MIMAT0037317
• Description: Sus scrofa ssc-miR-7-3p mature miRNA
• Sequence: 65 - CAACAAAUCACAGUCUGCCAUA - 86
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100


4. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252