Stem-loop ssc-mir-136

Accession

MI0002452

Description

Sus scrofa ssc-mir-136 precursor miRNA

Literature search

7 open access papers mention ssc-mir-136
(26 sentences)

Sequence

17 reads, 22 reads per million, 7 experiments

ugagcccucggaggACUCCAUUUGUUUUGAUGAUGGAuucuuacgcucCAUCAUCGUCUCAAAUGAGUCUucagaggguucu
.((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).)))))))).

Structure

u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuUCUGAG UAAAC   GCUACUACcu   a
u        a        -     UCU          cgc 

Annotation confidence Not enough data

Genome context

chr7: 132079194-132079275 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-mir-136

Mature ssc-miR-136-5p

• Accession: MIMAT0002158
• Description: Sus scrofa ssc-miR-136-5p mature miRNA
• Sequence: 15 - ACUCCAUUUGUUUUGAUGAUGGA - 37
• Evidence: experimental ; Illumina [2-3]

Mature ssc-miR-136-3p

• Accession: MIMAT0037320
• Description: Sus scrofa ssc-miR-136-3p mature miRNA
• Sequence: 49 - CAUCAUCGUCUCAAAUGAGUCU - 70
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252