Stem-loop ssc-mir-204

Accession

MI0002458

Description

Sus scrofa ssc-mir-204 precursor miRNA

Literature search

30 open access papers mention ssc-mir-204
(186 sentences)

Sequence

672086 reads, 650.0 reads per million, 194 experiments

ggcuacaguccuucucaugugacucguggacUUCCCUUUGUCAUCCUAUGCCUgagaauauaugaaggagGCUGGGAAGGCAAAGGGACGUucaauugucaucacuggc
.....((((.........(((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...))))).))))..

Structure

ggcua    ccuucucau     ucg     U          A     U    gagaau 
     cagu         gugac   uggac UCCCUUUGUC UCCUA GCCU      a
     ||||         |||||   ||||| |||||||||| ||||| ||||      u
     guca         uacug   acuUG AGGGAAACGG AGGGU CGga      a
---cg    --------c     uua     C          A     -    ggaagu 

Annotation confidence High

Genome context

chr1: 250527017-250527125 [-]

Mature ssc-miR-204-5p

• Accession: MIMAT0002164
• Description: Sus scrofa ssc-miR-204-5p mature miRNA
• Sequence: 32 - UUCCCUUUGUCAUCCUAUGCCU - 53
• Evidence: experimental ; 454 [2], Illumina [3-5]

Mature ssc-miR-204-3p

• Accession: MIMAT0052585
• Description: Sus scrofa ssc-miR-204-3p mature miRNA
• Sequence: 71 - GCUGGGAAGGCAAAGGGACGU - 91
• Evidence: experimental ; 454 [2], Illumina [3-5]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 19196471
   Cloning, characterization and expression analysis of porcine microRNAs
   Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
   BMC Genomics (2009) 10:65


3. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


4. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


5. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100