Stem-loop fru-let-7e

Accession

MI0003213

Description

Fugu rubripes fru-let-7e precursor miRNA

Literature search

1 open access papers mention fru-let-7e
(1 sentences)

Sequence

1057928 reads, 10538.0 reads per million, 12 experiments

gcuguccuugggguUGAGGUAGUAGAUUGAAUAGUUgugggguugugugaccucuuagugagauaaCUAUACAAUCUACUGUCUUUCcuaaggagacagc
(((((((((((((..((((((((((((((.((((((((((((((....))))))........)))))))).)))))))))))))))))))))))..))))

Structure

    --         uU              A        --------      g 
gcug  uccuugggg  GAGGUAGUAGAUUG AUAGUUgu        gggguu u
||||  |||||||||  |||||||||||||| ||||||||        ||||||  
cgac  aggaaucCU  UUCUGUCAUCUAAC UAUCaaua        cuccag g
    ag         --              A        gagugauu      u 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042287.1|: 10763693-10763792 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-let-7e

Mature fru-let-7e-5p

• Accession: MIMAT0002898
• Description: Fugu rubripes fru-let-7e-5p mature miRNA
• Sequence: 15 - UGAGGUAGUAGAUUGAAUAGUU - 36
• Evidence: not_experimental

Mature fru-let-7e-3p

• Accession: MIMAT0052811
• Description: Fugu rubripes fru-let-7e-3p mature miRNA
• Sequence: 67 - CUAUACAAUCUACUGUCUUUC - 87
• Evidence: not_experimental

References