Stem-loop fru-mir-222

Accession

MI0003219

Description

Fugu rubripes fru-mir-222 precursor miRNA

Literature search

1 open access papers mention fru-mir-222
(1 sentences)

Sequence

368858 reads, 4098.0 reads per million, 12 experiments

ucaguUGCUCAGUAGGCAGUGUAGAUCcuguguagcaaucagcAGCUACAUCUGGCUACUGGGUCUCug
.(((..(((((((((.((((((((...(((.........)))...))))).))).)))))))))..)))

Structure

u   uU         G   -     AUC   ugu 
 cag  GCUCAGUAG CAG UGUAG   cug   a
 |||  ||||||||| ||| |||||   |||   g
 guC  UGGGUCAUC GUC ACAUC   gac   c
-   UC         G   U     GAc   uaa 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042285.1|: 13965749-13965817 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-222

Mature fru-miR-222-5p

• Accession: MIMAT0052815
• Description: Fugu rubripes fru-miR-222-5p mature miRNA
• Sequence: 6 - UGCUCAGUAGGCAGUGUAGAUC - 27
• Evidence: not_experimental

Mature fru-miR-222-3p

• Accession: MIMAT0002904
• Description: Fugu rubripes fru-miR-222-3p mature miRNA
• Sequence: 44 - AGCUACAUCUGGCUACUGGGUCUC - 67
• Evidence: not_experimental

References