Stem-loop fru-mir-142

Accession

MI0003223

Description

Fugu rubripes fru-mir-142 precursor miRNA

Literature search

1 open access papers mention fru-mir-142
(1 sentences)

Sequence

63146 reads, 735.0 reads per million, 12 experiments

acagugcugucaccCAUAAAGUAGAAAGCACUACUaaacuauucuacacaguGUAGUGUUUCCUACUUUAUGGAugagugcacugu
(((((((..(((.(((((((((((.(((((((((..................))))))))).))))))))))).)))..)))))))

Structure

       ug   c           A         Uaaacuau 
acagugc  uca cCAUAAAGUAG AAGCACUAC        u
|||||||  ||| ||||||||||| |||||||||         
ugucacg  agu GGUAUUUCAUC UUUGUGAUG        c
       ug   A           C         ugacacau 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042295.1|: 11534416-11534501 [+]

Mature fru-miR-142-5p

• Accession: MIMAT0002908
• Description: Fugu rubripes fru-miR-142-5p mature miRNA
• Sequence: 15 - CAUAAAGUAGAAAGCACUACU - 35
• Evidence: not_experimental

Mature fru-miR-142-3p

• Accession: MIMAT0052817
• Description: Fugu rubripes fru-miR-142-3p mature miRNA
• Sequence: 53 - GUAGUGUUUCCUACUUUAUGGA - 74
• Evidence: not_experimental

References