Stem-loop fru-let-7a-3

Accession

MI0003244

Description

Fugu rubripes fru-let-7a-3 precursor miRNA

Literature search

1 open access papers mention fru-let-7a-3
(3 sentences)

Sequence

4331651 reads, 47519.0 reads per million, 12 experiments

cagggUGAGGUAGUAGGUUGUAUAGUUuggugggugggauugcccgcccaggugauaaCUAUACAGUCUAUUGCCUUCCUugaggagcucacug
(((((.(((((((((((((((((((((...((((((((....))))))))......))))))))))))))))))))))))))............

Structure

------------     U                     ---ugg        a 
            caggg GAGGUAGUAGGUUGUAUAGUU      uggguggg u
            ||||| |||||||||||||||||||||      ||||||||  
            guUCC UUCCGUUAUCUGACAUAUCaa      acccgccc u
gucacucgagga     -                     uagugg        g 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042287.1|: 10763962-10764055 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-let-7a-3

Mature fru-let-7a-5p

• Accession: MIMAT0002928
• Description: Fugu rubripes fru-let-7a-5p mature miRNA
• Sequence: 6 - UGAGGUAGUAGGUUGUAUAGUU - 27
• Evidence: not_experimental

Mature fru-let-7a-3-3p

• Accession: MIMAT0052832
• Description: Fugu rubripes fru-let-7a-3-3p mature miRNA
• Sequence: 59 - CUAUACAGUCUAUUGCCUUCCU - 80
• Evidence: not_experimental

References