Stem-loop fru-mir-489

Accession

MI0003254

Description

Fugu rubripes fru-mir-489 precursor miRNA

Sequence

17360 reads, 182.0 reads per million, 12 experiments

cuucugauacuggugguggcuuggUGGUCGUAUGCAUGACGUCAUUuacuucgaugauuggAGUGACAUCAUAUGUACGGCUGCuaaacugcuacaagagac
.........((.(((((((.((((((((((((((.((((.(((((((...((...))...))))))).)))).)))))))))))))).))))))).))....

Structure

cuucugaua  g       c              C    C       acu  g 
         cu guggugg uuggUGGUCGUAUG AUGA GUCAUUu   uc  
         || ||||||| |||||||||||||| |||| |||||||   || a
         ga caucguc aauCGUCGGCAUGU UACU CAGUGAg   ag  
-----caga  a       a              A    A       guu  u 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042296.1|: 11042011-11042112 [+]

Mature fru-miR-489-5p

• Accession: MIMAT0052838
• Description: Fugu rubripes fru-miR-489-5p mature miRNA
• Sequence: 25 - UGGUCGUAUGCAUGACGUCAUU - 46
• Evidence: not_experimental

Mature fru-miR-489-3p

• Accession: MIMAT0002938
• Description: Fugu rubripes fru-miR-489-3p mature miRNA
• Sequence: 62 - AGUGACAUCAUAUGUACGGCUGC - 84
• Evidence: not_experimental

References