Stem-loop fru-mir-192

Accession

MI0003257

Description

Fugu rubripes fru-mir-192 precursor miRNA

Literature search

1 open access papers mention fru-mir-192
(1 sentences)

Sequence

4093363 reads, 54216.0 reads per million, 12 experiments

ugggacgugaggugAUGACCUAUGAAUUGACAGCCaguaacuggagccucugCCUGUCAGUUCUGUAGGCCACUgcuacguu
...((((((.((((..(.(((((((((((((((.(((............))).)))))))))).))))))))))..))))))

Structure

ugg      -a    AU A     -          C   uaacu 
   gacgug  ggug  G CCUAU GAAUUGACAG Cag     g
   ||||||  ||||  | ||||| |||||||||| |||      
   uugcau  UCAC  C GGAUG CUUGACUGUC guc     g
---      cg    -- -     U          C   uccga 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042299.1|: 11337835-11337916 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-192

Mature fru-miR-192-5p

• Accession: MIMAT0002941
• Description: Fugu rubripes fru-miR-192-5p mature miRNA
• Sequence: 15 - AUGACCUAUGAAUUGACAGCC - 35
• Evidence: not_experimental

Mature fru-miR-192-3p

• Accession: MIMAT0052839
• Description: Fugu rubripes fru-miR-192-3p mature miRNA
• Sequence: 53 - CCUGUCAGUUCUGUAGGCCACU - 74
• Evidence: not_experimental

References