Stem-loop fru-mir-205

Accession

MI0003281

Description

Fugu rubripes fru-mir-205 precursor miRNA

Literature search

1 open access papers mention fru-mir-205
(175 sentences)

Sequence

97441 reads, 1666.0 reads per million, 12 experiments

uguguucuaUCCUUCAUUCCACCGGAGUCUGuauguguauuuaaccagaUUUCAGUGGUGUGAAGUGUAAGagacaugg
(((.((.(((.((((((.((((.((((((((..((......))..)))))))).)))).)))))).))).)).)))...

Structure

---   g  c   C      U    C        ua  ug 
   ugu uu uaU CUUCAU CCAC GGAGUCUG  ug  u
   ||| || ||| |||||| |||| ||||||||  ||   
   aca aG AUG GAAGUG GGUG CUUUagac  au  a
ggu   g  A   U      U    A        ca  uu 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042287.1|: 15878755-15878833 [-]

Mature fru-miR-205-5p

• Accession: MIMAT0002965
• Description: Fugu rubripes fru-miR-205-5p mature miRNA
• Sequence: 10 - UCCUUCAUUCCACCGGAGUCUG - 31
• Evidence: not_experimental

Mature fru-miR-205-3p

• Accession: MIMAT0052852
• Description: Fugu rubripes fru-miR-205-3p mature miRNA
• Sequence: 50 - UUUCAGUGGUGUGAAGUGUAAG - 71
• Evidence: not_experimental

References