Stem-loop fru-mir-365

Accession

MI0003283

Description

Fugu rubripes fru-mir-365 precursor miRNA

Sequence

6000 reads, 76.0 reads per million, 12 experiments

cagcaagaaaagugAGGGACUUUUAGGGGCAGCUGUGuuuuauuaacccagucaUAAUGCCCCUAAAAAUCCUUAUugcucuugcaauugucaac
..((((((..((((((((..(((((((((((((((.(((.....))).)))).....))))))))))).))))))))..))))))..........

Structure

--------ca      aa        AC           -----    U   u 
          gcaaga  agugAGGG  UUUUAGGGGCA     GCUG Guu u
          ||||||  ||||||||  |||||||||||     |||| ||| a
          cguucu  uUAUUCCU  AAAAUCCCCGU     ugac caa u
caacuguuaa      cg        -A           AAUac    c   u 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042301.1|: 2643437-2643531 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-365

Mature fru-miR-365-5p

• Accession: MIMAT0052853
• Description: Fugu rubripes fru-miR-365-5p mature miRNA
• Sequence: 15 - AGGGACUUUUAGGGGCAGCUGUG - 37
• Evidence: not_experimental

Mature fru-miR-365-3p

• Accession: MIMAT0002967
• Description: Fugu rubripes fru-miR-365-3p mature miRNA
• Sequence: 55 - UAAUGCCCCUAAAAAUCCUUAU - 76
• Evidence: not_experimental

References