Stem-loop fru-mir-216a

Accession

MI0003291

Description

Fugu rubripes fru-mir-216a precursor miRNA

Sequence

21579 reads, 255.0 reads per million, 12 experiments

uugguaAAAUCUCAGCUGGCAACUGUGAgucguucacuagcugcucuCACAAUGGCCUCUGGGAUUAUGcuaa
.(((((.((((((((..(((...((((((..((.........)).))))))...))).)))))))).))))).

Structure

u     A        CU   AAC      uc  uca 
 uggua AAUCUCAG  GGC   UGUGAg  gu   c
 ||||| ||||||||  |||   ||||||  ||   u
 aucGU UUAGGGUC  CCG   ACACuc  cg   a
a     A        -U   GUA      -u  ucg 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042288.1|: 12073518-12073590 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-216a

Mature fru-miR-216a-5p

• Accession: MIMAT0002973
• Description: Fugu rubripes fru-miR-216a-5p mature miRNA
• Sequence: 7 - AAAUCUCAGCUGGCAACUGUGA - 28
• Evidence: not_experimental

Mature fru-miR-216a-3p

• Accession: MIMAT0052856
• Description: Fugu rubripes fru-miR-216a-3p mature miRNA
• Sequence: 48 - CACAAUGGCCUCUGGGAUUAUG - 69
• Evidence: not_experimental

References