Accession
MI0003293
Description
Fugu rubripes
fru-mir-216b precursor miRNA
Sequence
451710
reads,
4322.0
reads per million, 12 experiments
ugacuguuUAAUCUCUGCAGGCAACUGUGAugguguuuuauauucucACAAUCACCUGGAGAGAUUCUGcaguuuau
.((((((..(((((((.((((....(((((.(((((...))))).)))))....)))).)))))))..))))))...
.((((((..(((((((.((((....(((((.(((((...))))).)))))....)))).)))))))..))))))...
Structure
--u uU G CAAC u u gacugu AAUCUCU CAGG UGUGA ggugu |||||| ||||||| |||| ||||| ||||| u uugacG UUAGAGA GUCC ACAcu uuaua uau UC G ACUA c u
Annotation confidence
High
Do you think this miRNA is real?
Comments
This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).
Genome context
ref|NC_042288.1|: 12074200-12074276 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from fru-mir-216b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature fru-miR-216b-5p
| Accession | MIMAT0002975 |
| Description | Fugu rubripes fru-miR-216b-5p mature miRNA |
| Sequence | 9 - UAAUCUCUGCAGGCAACUGUGA - 30 |
| Evidence | not_experimental |
Mature fru-miR-216b-3p
| Accession | MIMAT0052857 |
| Description | Fugu rubripes fru-miR-216b-3p mature miRNA |
| Sequence | 48 - ACAAUCACCUGGAGAGAUUCUG - 69 |
| Evidence | not_experimental |
References
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