Stem-loop fru-mir-301

Accession

MI0003309

Description

Fugu rubripes fru-mir-301 precursor miRNA

Sequence

5946 reads, 75.0 reads per million, 12 experiments

cagcugcUUUGACAAUGUUGCACUACUguaccauccauucuagCAGUGCAAUAGUAUUGUCAUAGcau
....((((.(((((((((((((((.(((............))).))))))))...))))))).)))).

Structure

cagc    U       ---        A   uacca 
    ugcU UGACAAU   GUUGCACU CUg     u
    |||| |||||||   |||||||| |||      
    acGA ACUGUUA   UAACGUGA gau     c
---u    U       UGA        C   cuuac 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042290.1|: 11253959-11254026 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-301

Mature fru-miR-301-5p

• Accession: MIMAT0052861
• Description: Fugu rubripes fru-miR-301-5p mature miRNA
• Sequence: 8 - UUUGACAAUGUUGCACUACU - 27
• Evidence: not_experimental

Mature fru-miR-301-3p

• Accession: MIMAT0002987
• Description: Fugu rubripes fru-miR-301-3p mature miRNA
• Sequence: 44 - CAGUGCAAUAGUAUUGUCAUAG - 65
• Evidence: not_experimental

References