Stem-loop fru-mir-218a-1

Accession

MI0003317

Description

Fugu rubripes fru-mir-218a-1 precursor miRNA

Sequence

375528 reads, 3536.0 reads per million, 12 experiments

cggcugucucUUGUGCUUGAUCUAACCAUGUGgccccgccuauugugacaucaCAUGGUUCCGUCAAGCGCCAGGgaccgcug
((((.((((((.(((((((((..((((((((((...(((.....)))...))))))))))..))))))))).)))))).))))

Structure

    u      U         CU          ccc   c 
cggc gucucU GUGCUUGAU  AACCAUGUGg   cgc u
|||| |||||| |||||||||  ||||||||||   ||| a
gucg cagGGA CGCGAACUG  UUGGUACacu   gug u
    c      C         CC          aca   u 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042298.1|: 12300621-12300703 [-]

Mature fru-miR-218a-5p

• Accession: MIMAT0002993
• Description: Fugu rubripes fru-miR-218a-5p mature miRNA
• Sequence: 11 - UUGUGCUUGAUCUAACCAUGUG - 32
• Evidence: not_experimental

Mature fru-miR-218a-1-3p

• Accession: MIMAT0052864
• Description: Fugu rubripes fru-miR-218a-1-3p mature miRNA
• Sequence: 54 - CAUGGUUCCGUCAAGCGCCAGG - 75
• Evidence: not_experimental

References