Stem-loop fru-mir-21

Accession

MI0003325

Description

Fugu rubripes fru-mir-21 precursor miRNA

Literature search

4 open access papers mention fru-mir-21
(11 sentences)

Sequence

2295090 reads, 28153.0 reads per million, 12 experiments

ugucaaaUAGCUUAUCAGACUGGUGUUGGCuguuaagauugcaaggCGACAACAGUCUGUAGGCUGUcugaca
(((((.((((((((.(((((((.(((((.((((.......)).)).))))).))))))))))))))).)))))

Structure

     a        U       G     G  -  ua 
uguca aUAGCUUA CAGACUG UGUUG Cu gu  a
||||| |||||||| ||||||| ||||| || ||  g
acagu UGUCGGAU GUCUGAC ACAGC ga cg  a
     c        -       A     g  a  uu 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042299.1|: 3285153-3285225 [+]

Mature fru-miR-21-5p

• Accession: MIMAT0002999
• Description: Fugu rubripes fru-miR-21-5p mature miRNA
• Sequence: 8 - UAGCUUAUCAGACUGGUGUUGGC - 30
• Evidence: not_experimental

Mature fru-miR-21-3p

• Accession: MIMAT0052868
• Description: Fugu rubripes fru-miR-21-3p mature miRNA
• Sequence: 47 - CGACAACAGUCUGUAGGCUGU - 67
• Evidence: not_experimental

References