Accession
MI0003335
Description
Fugu rubripes
fru-mir-338 precursor miRNA
Sequence
129351
reads,
1319.0
reads per million, 12 experiments
ggauucucccugcAACAACAUCCUGGUGCUGCCUGAGUcacuuucacaaacUCCAGCAUCAGUGAUUUUGUUGcgggggg
.....(((((((((((((.((((((((((((...((((...........))))))))))))).))).)))))))))))))
.....(((((((((((((.((((((((((((...((((...........))))))))))))).))).)))))))))))))
Structure
ggauu C - CCU cacu
cucccugcAACAA AUC CUGGUGCUG GAGU u
||||||||||||| ||| ||||||||| |||| u
ggggggcGUUGUU UAG GACUACGAC CUca c
----- U U --- aaca
Annotation confidence
High
Do you think this miRNA is real?
Comments
This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).
Genome context
ref|NC_042289.1|: 9249304-9249383 [+]
Database links
Mature fru-miR-338-5p
| Accession | MIMAT0052872 |
| Description | Fugu rubripes fru-miR-338-5p mature miRNA |
| Sequence | 14 - AACAACAUCCUGGUGCUGCCUGAGU - 38 |
| Evidence | not_experimental |
Mature fru-miR-338-3p
| Accession | MIMAT0003007 |
| Description | Fugu rubripes fru-miR-338-3p mature miRNA |
| Sequence | 52 - UCCAGCAUCAGUGAUUUUGUUG - 73 |
| Evidence | not_experimental |
References
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