Stem-loop fru-let-7j

Accession

MI0003341

Description

Fugu rubripes fru-let-7j precursor miRNA

Literature search

1 open access papers mention fru-let-7j
(1 sentences)

Sequence

273685 reads, 2605.0 reads per million, 12 experiments

gucUGAGGUAGUUUUUUGUACAGUUugagggucugugauucugccccauacaggagcuaaCUGUACAAGUGACUGCCUUGCc
....(((((((((.(((((((((((..((((((...))))))((.((.....)).)).))))))))))).)))))))))...

Structure

gucU         U           --------------ug      u 
    GAGGUAGUU UUUGUACAGUU                aggguc  
    ||||||||| |||||||||||                |||||| g
    UUCCGUCAG GAACAUGUCaa                ucuuag  
-cCG         U           ucgaggacauaccccg      u 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042303.1|: 10248379-10248460 [-]

Mature fru-let-7j-5p

• Accession: MIMAT0003013
• Description: Fugu rubripes fru-let-7j-5p mature miRNA
• Sequence: 4 - UGAGGUAGUUUUUUGUACAGUU - 25
• Evidence: not_experimental

Mature fru-let-7j-3p

• Accession: MIMAT0052875
• Description: Fugu rubripes fru-let-7j-3p mature miRNA
• Sequence: 61 - CUGUACAAGUGACUGCCUUGC - 81
• Evidence: not_experimental

References