Stem-loop fru-mir-212

Accession

MI0003383

Description

Fugu rubripes fru-mir-212 precursor miRNA

Literature search

1 open access papers mention fru-mir-212
(1 sentences)

Sequence

91263 reads, 825.0 reads per million, 12 experiments

ggucagcgcaucaacACCUUGGCUCUAGACUGCUUACUgcuaaaaccgcucauaaguacagUAACAGUCUACAGUCAUGGCUacugacgccugac
.(((((.((.(((...((.(((((.(((((((.((((((...................))))))))))))).))))).))....))).)))))))

Structure

g     c  a   -acA  U     C       C      cuaaaacc 
 gucag gc uca    CC UGGCU UAGACUG UUACUg        g
 ||||| || |||    || ||||| ||||||| ||||||        c
 caguc cg agu    GG ACUGA AUCUGAC AAUgac        u
-     -  c   caUC  U     C       -      augaauac 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042295.1|: 10999329-10999423 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-212

Mature fru-miR-212-5p

• Accession: MIMAT0052893
• Description: Fugu rubripes fru-miR-212-5p mature miRNA
• Sequence: 16 - ACCUUGGCUCUAGACUGCUUACU - 38
• Evidence: not_experimental

Mature fru-miR-212-3p

• Accession: MIMAT0003047
• Description: Fugu rubripes fru-miR-212-3p mature miRNA
• Sequence: 62 - UAACAGUCUACAGUCAUGGCU - 82
• Evidence: not_experimental

References