Stem-loop fru-let-7a-1

Accession

MI0003407

Description

Fugu rubripes fru-let-7a-1 precursor miRNA

Literature search

1 open access papers mention fru-let-7a-1
(4 sentences)

Sequence

3187422 reads, 32588.0 reads per million, 12 experiments

cagguUGAGGUAGUAGGUUGUAUAGUUgagagugacaccacaggagaugaCUGUACAGCCUCCUAGCUUUCCcu
.(((..(((.(((.(((((((((((((....(((....))).......))))))))))))).))).)))..)))

Structure

c   uU   G   U             ---gaga   a 
 agg  GAG UAG AGGUUGUAUAGUU       gug c
 |||  ||| ||| |||||||||||||       |||  
 ucC  UUC AUC UCCGACAUGUCag       cac a
-   CU   G   C             uagagga   c 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042299.1|: 13469387-13469460 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-let-7a-1

Mature fru-let-7a-5p

• Accession: MIMAT0002928
• Description: Fugu rubripes fru-let-7a-5p mature miRNA
• Sequence: 6 - UGAGGUAGUAGGUUGUAUAGUU - 27
• Evidence: not_experimental

Mature fru-let-7a-1-3p

• Accession: MIMAT0052833
• Description: Fugu rubripes fru-let-7a-1-3p mature miRNA
• Sequence: 51 - CUGUACAGCCUCCUAGCUUUCC - 72
• Evidence: not_experimental

References