Stem-loop fru-mir-375-1

Accession

MI0003419

Description

Fugu rubripes fru-mir-375-1 precursor miRNA

Sequence

223787 reads, 3901.0 reads per million, 12 experiments

uguacuugcuucACGUUGAGCCUCACGCACAAUAccugaagaugaaguUUUGUUCGUUCGGCUCGCGUUAugcaggu
...((((((...((((.(((((..(((.((((.((...........)).)))).)))..)))))))))...))))))

Structure

ugu      uuc    U     UC   C    U  cuga 
   acuugc   ACGU GAGCC  ACG ACAA Ac    a
   ||||||   |||| |||||  ||| |||| ||    g
   uggacg   UGCG CUCGG  UGC UGUU ug    a
---      uAU    -     CU   U    U  aagu 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042285.1|: 23776615-23776691 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-375-1

Mature fru-miR-375-5p

• Accession: MIMAT0052903
• Description: Fugu rubripes fru-miR-375-5p mature miRNA
• Sequence: 13 - ACGUUGAGCCUCACGCACAAUA - 34
• Evidence: not_experimental

Mature fru-miR-375-3p

• Accession: MIMAT0003069
• Description: Fugu rubripes fru-miR-375-3p mature miRNA
• Sequence: 49 - UUUGUUCGUUCGGCUCGCGUUA - 70
• Evidence: not_experimental

References