Stem-loop fru-mir-128-1

Accession

MI0003421

Description

Fugu rubripes fru-mir-128-1 precursor miRNA

Sequence

3638118 reads, 33141.0 reads per million, 12 experiments

gagagccuggguaCGGGGCCGGGACGCUGUUUGAGAguccucuaugaaucUCACAGUGAACCGGUCUCUUUUccagccccucacu
(((.(.(((((...((((((((..((((((..((((.((......)).))))))))))..))))))))...))))).).)))...

Structure

---   a c     uaC        GA      UU    g  cu 
   gag g cuggg   GGGGCCGG  CGCUGU  GAGA uc  c
   ||| | |||||   ||||||||  ||||||  |||| ||   
   cuc c gaccU   CUCUGGCC  GUGACA  CUcu ag  u
uca   c c     UUU        AA      --    a  ua 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042292.1|: 5053222-5053306 [+]

Mature fru-miR-128-1-5p

• Accession: MIMAT0052878
• Description: Fugu rubripes fru-miR-128-1-5p mature miRNA
• Sequence: 14 - CGGGGCCGGGACGCUGUUUGAGA - 36
• Evidence: not_experimental

Mature fru-miR-128-3p

• Accession: MIMAT0003018
• Description: Fugu rubripes fru-miR-128-3p mature miRNA
• Sequence: 51 - UCACAGUGAACCGGUCUCUUUU - 72
• Evidence: not_experimental

References