Stem-loop fru-mir-96

Accession

MI0003455

Description

Fugu rubripes fru-mir-96 precursor miRNA

Literature search

1 open access papers mention fru-mir-96
(17 sentences)

Sequence

18119 reads, 187.0 reads per million, 12 experiments

cucuucuucgcccauUUUGGCACUAGCACAUUUUUGCUucuguauguauacuuugagCAAUUAUGUGUAGUGCCAAUAuaggagaagacagacuuucaaccu
.((((((((.((.((.(((((((((.(((((..((((((..(((....)))...))))))..)))))))))))))).)).)).))))).)))..........

Structure

---------c   -     g  c  U         G     UU      -cu   u 
          ucu ucuuc cc au UUGGCACUA CACAU  UUGCUu   gua g
          ||| ||||| || || ||||||||| |||||  ||||||   |||  
          aga agaag gg uA AACCGUGAU GUGUA  AACgag   cau u
uccaacuuuc   c     a  a  U         -     UU      uuu   a 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042302.1|: 5942627-5942728 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-96

Mature fru-miR-96-5p

• Accession: MIMAT0003091
• Description: Fugu rubripes fru-miR-96-5p mature miRNA
• Sequence: 16 - UUUGGCACUAGCACAUUUUUGCU - 38
• Evidence: not_experimental

Mature fru-miR-96-3p

• Accession: MIMAT0052914
• Description: Fugu rubripes fru-miR-96-3p mature miRNA
• Sequence: 58 - CAAUUAUGUGUAGUGCCAAUA - 78
• Evidence: not_experimental

References