Stem-loop fru-mir-22a

Accession

MI0003463

Description

Fugu rubripes fru-mir-22a precursor miRNA

Literature search

1 open access papers mention fru-mir-22a
(1 sentences)

Sequence

2811659 reads, 34379.0 reads per million, 12 experiments

gccgaccuacagcAGUUCUUCACUGGCAAGCUUUAuguccucgugcaacagcuaAAGCUGCCAGCUGAAGAACUGUugugguuggc
(((((((.((((((((((((((((((((.(((((((((.........)))..)))))))))))).)))))))))))))))))))))

Structure

       u              -      A      --   ccu 
gccgacc acagcAGUUCUUCA CUGGCA GCUUUA  ugu   c
||||||| |||||||||||||| |||||| ||||||  |||   g
cgguugg uguUGUCAAGAAGU GACCGU CGAAau  aca   u
       -              C      -      cg   acg 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042295.1|: 7388444-7388529 [+]

Mature fru-miR-22a-5p

• Accession: MIMAT0052918
• Description: Fugu rubripes fru-miR-22a-5p mature miRNA
• Sequence: 14 - AGUUCUUCACUGGCAAGCUUUA - 35
• Evidence: not_experimental

Mature fru-miR-22a-3p

• Accession: MIMAT0003099
• Description: Fugu rubripes fru-miR-22a-3p mature miRNA
• Sequence: 55 - AAGCUGCCAGCUGAAGAACUGU - 76
• Evidence: not_experimental

References