Stem-loop fru-mir-15a

Accession

MI0003469

Description

Fugu rubripes fru-mir-15a precursor miRNA

Literature search

1 open access papers mention fru-mir-15a
(1 sentences)

Sequence

61522 reads, 674.0 reads per million, 12 experiments

cuggugaugcugUAGCAGCACGGAAUGGUUUGUGgguuacacugagauaCAGGCCAUACUGUGCUGCCGCA
..........(((.(((((((((.((((((((((..(((...)))..)))))))))).))))))))).)))

Structure

cuggugaugc   A         A          gg   c 
          ugU GCAGCACGG AUGGUUUGUG  uua  
          ||| ||||||||| ||||||||||  ||| a
          ACG CGUCGUGUC UACCGGACau  agu  
----------   C         A          ag   c 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042285.1|: 16522331-16522401 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-15a

Mature fru-miR-15a-5p

• Accession: MIMAT0003105
• Description: Fugu rubripes fru-miR-15a-5p mature miRNA
• Sequence: 13 - UAGCAGCACGGAAUGGUUUGUG - 34
• Evidence: not_experimental

Mature fru-miR-15a-3p

• Accession: MIMAT0052921
• Description: Fugu rubripes fru-miR-15a-3p mature miRNA
• Sequence: 50 - CAGGCCAUACUGUGCUGCCGCA - 71
• Evidence: not_experimental

References