miRBase entry: dre-mir-34b

Stem-loop dre-mir-34b

Accession

MI0003690

Description

Danio rerio dre-mir-34b precursor miRNA mir-34

Gene
family?

RF00456; mir-34

Literature search

28 open access papers mention dre-mir-34b
(71 sentences)

Sequence

35018 reads, 250.0 reads per million, 190 experiments

gggguuggucugUAGGCAGUGUUGUUAGCUGAUUGuuucauaugaacuauAAUCACUAACCAUACUGCCAACacaacaaccuaca
.((((((...(((.((((((((.(((((.((((((((((....)))..)))))))))))).)))))))).)))...))))))...

Structure

--g      guc   A        U     C       --   a 
   ggguug   ugU GGCAGUGU GUUAG UGAUUGu  uuc u
   ||||||   ||| |||||||| ||||| |||||||  |||  
   uccaac   aCA CCGUCAUA CAAUC ACUAAua  aag a
aca      aac   A        C     -       uc   u

Annotation confidence High

Do you think this miRNA is real?

Genome context

chr5: 57922520-57922604 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-34b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-34b-5p

Accession	MIMAT0003346
Description	Danio rerio dre-miR-34b-5p mature miRNA
Sequence	13 - UAGGCAGUGUUGUUAGCUGAUUG - 35
Evidence	experimental in-situ [1]
Database links
Predicted targets

Mature dre-miR-34b-3p

Accession	MIMAT0052785
Description	Danio rerio dre-miR-34b-3p mature miRNA
Sequence	51 - AAUCACUAACCAUACUGCCAAC - 72
Evidence	experimental in-situ [1]

References

PubMed ID: 15919954
MicroRNA expression in zebrafish embryonic development
"Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
"Science (2005) 309:310-311